rs46826204 SNP Detail

Summary

• ID
  rs46826204
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:31768726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTTGGGGCT GGACATTATG ACATACTAAT TATGGTTCTA
  TTTACCTTGG TGTGAGGCTT GAGTATTTAA AGGAGCCATA CTATTTTCCA TAAAAATTTT
  R
  CACAGCCTAT GATTATGGTA CTACCATTTG GCGGCTATAT AACATTCCAT GCTTCTTTTT
  TTTTTTAATC CATAAGTATT TTGGAAGCTT ATAGTAGCCT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63012823	NES17430068	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46826204					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63012823	NES17430068	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:31768726 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9789	CpG island 9789	218 bp distal
Gm58914	predicted gene, 58914	689 bp upstream
Rr370349	regulatory region 370349	1056 bp downstream
Rr405571	regulatory region 405571	1229 bp downstream
Rr405572	regulatory region 405572	575 bp downstream
Rr535278	regulatory region 535278	1483 bp distal
Rr535279	regulatory region 535279	1280 bp distal
Rr535280	regulatory region 535280	700 bp distal
Rr535281	regulatory region 535281	1192 bp distal
Rr535282	regulatory region 535282	199 bp distal
Sap130	Sin3A associated protein	within coordinates
Tssr150348	transcription start site region 150348	1310 bp downstream
Tssr150349	transcription start site region 150349	1302 bp downstream
Tssr150350	transcription start site region 150350	1283 bp downstream
Tssr150351	transcription start site region 150351	535 bp downstream
Tssr152716	transcription start site region 152716	862 bp upstream