rs46826449 SNP Detail

Summary

• ID
  rs46826449
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19240430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTCAAGT TGATATTAAA
  TCAGCCAGTA TAGTAGTAAT GTGTGAGTGT TGGATTTCTA GTTTGTAAAT GTATCACAGT
  AATGTAAGAT TAGGGAACAC TGGGTGAGGT AACATCAGAA CTTTTCCTAC CCCTTGGCAC
  TTTTCTGTAA AACAAATATT TTTTTTCTTT CAAAAAGCAA ATCTTGCTGG GCAGTGATGG
  Y
  GCACACCTTT AATTCTAGCA CTCCGGAGGC AGAGGCAGGT GGATTTCTGA GTTCGAGGCC
  AGCCTGGTCT ACAGAGTGAG TTCCTGGACA GCCAGGGCTA TACAGAAAAA CCCTGTCTCG
  AAAACAAAAC AAAACAAAAC AAAAGCAAAG CAAAACAAAA GCAAAGCAAA GCTTAAAAGT
  TCAAAAGCAT AAGGACTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134665687	ENSMUSSNP651122	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46826449					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19240430 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13001	CpG island 13001	1489 bp proximal
Mtfr1	mitochondrial fission regulator 1	1061 bp upstream
Rr397614	regulatory region 397614	1720 bp upstream
Tssr28500	transcription start site region 28500	1036 bp upstream
Tssr28501	transcription start site region 28501	1055 bp upstream
Tssr28502	transcription start site region 28502	1093 bp upstream
Tssr28503	transcription start site region 28503	1100 bp upstream
Tssr28504	transcription start site region 28504	1819 bp upstream
Tssr28505	transcription start site region 28505	1833 bp upstream
Tssr28506	transcription start site region 28506	1846 bp upstream
Tssr28507	transcription start site region 28507	1948 bp upstream
Tssr28508	transcription start site region 28508	1960 bp upstream