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rs46826969 SNP Detail
Summary
  • ID
    rs46826969
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:35500307 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TAGGGTTCCT CTGTTCTCTG
    AAGTGCCCTG GCTGCATGAT CCAGGCGAGT CACTCTTTGT TTTAGCTTCT TCTGGTGTGA
    AATGTGAGGG GAAAGCTGGA TGAACTTTTA GAGATGGAAT CACAAACTGC CTATTAAAAG
    TAACCTAAAA GCTAGTTTTA CTTCACATCT TACAAAGGTC AGTTACAATT TATTTAAAAT
    Y
    TTCTCAGCTC AATGTAATAA TAGCAACTGA GAGAAAAACT GGAGTATAAA TACAGAAGTA
    TACTGGTTTC ATAGTATAGA GTGTCTTACC TGCACCTAGC CTGGGACAAT ATTTTGACTT
    TGCAGCTACA ATTAAAACAC AGTCGTAGCT AACATCAAGT AGTGTTCAGC TTCATTGTAA
    TTTATGAAAC ACACATGCCA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
AKR/J
PWD/PhJ
ss60995115 NES16129123 PERLEGEN MM_PANEL2 f SNP C T
SNP Consensus Information
SNP Consensus Type
AKR/J
PWD/PhJ
rs46826969 SNP C T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss60995115 NES16129123 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:35500307 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi18877 CpG island 18877 1491 bp proximal
E130304I02Rik RIKEN cDNA E130304I02 gene 1710 bp upstream
Gm73276 predicted gene, 73276 878 bp downstream
Rr645475 regulatory region 645475 1304 bp proximal
Rr645476 regulatory region 645476 1721 bp proximal
Zfp507 zinc finger protein 507 within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory