rs46826969 SNP Detail

Summary

• ID
  rs46826969
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:35500307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGGTTCCT CTGTTCTCTG
  AAGTGCCCTG GCTGCATGAT CCAGGCGAGT CACTCTTTGT TTTAGCTTCT TCTGGTGTGA
  AATGTGAGGG GAAAGCTGGA TGAACTTTTA GAGATGGAAT CACAAACTGC CTATTAAAAG
  TAACCTAAAA GCTAGTTTTA CTTCACATCT TACAAAGGTC AGTTACAATT TATTTAAAAT
  Y
  TTCTCAGCTC AATGTAATAA TAGCAACTGA GAGAAAAACT GGAGTATAAA TACAGAAGTA
  TACTGGTTTC ATAGTATAGA GTGTCTTACC TGCACCTAGC CTGGGACAAT ATTTTGACTT
  TGCAGCTACA ATTAAAACAC AGTCGTAGCT AACATCAAGT AGTGTTCAGC TTCATTGTAA
  TTTATGAAAC ACACATGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	PWD/PhJ
ss60995115	NES16129123	PERLEGEN	MM_PANEL2	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	PWD/PhJ
rs46826969					SNP	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60995115	NES16129123	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:35500307 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18877	CpG island 18877	1491 bp proximal
E130304I02Rik	RIKEN cDNA E130304I02 gene	1710 bp upstream
Gm73276	predicted gene, 73276	878 bp downstream
Rr645475	regulatory region 645475	1304 bp proximal
Rr645476	regulatory region 645476	1721 bp proximal
Zfp507	zinc finger protein 507	Intron