rs46827105 SNP Detail

Summary

• ID
  rs46827105
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:53224921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAACTCCA CCTACTGCCT
  GCTGGCCCAG CATTAAATAC TTTGGAGACT CAAAAGTCTC TGAGCCTGTC ACAATGGGCT
  TGCTCTCAGG TAAGGCACTG TATGTCATGT CTAAAGTCTG TCTCCTGAGA GCAGAGGAAG
  AGACTCTGAC ATCTTCTTTG TTGCAGCTCT CAAATTTATA TTTGCAGTCC AGAGTTGATG
  R
  CCGCTTTTTA TTTATTTCCT TGTCTTCCAG CTTAAGCAGC TCCATACTGT CATGTAAGCA
  ACTTGGCCCA AAGGTCCGTA AGTGGGACAT AAAAGGCTTG CCCTTCCCTG TCATCTCCAA
  GCTATTCCTC AGCTCTTGCG GGTATGCAAT GCCACTGTGG TTGCGGGTAT CTGGGGCAGT
  AAGTTTGGAC AAAGATGACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52292187	NES15299027	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46827105					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52292187	NES15299027	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:53224921 () rs orientation: forward

Symbol	Name	Function Class
Cep85l	centrosomal protein 85-like	within coordinates
Tssr97581	transcription start site region 97581	308 bp upstream
Tssr97582	transcription start site region 97582	187 bp upstream
Tssr97583	transcription start site region 97583	956 bp downstream
Tssr97584	transcription start site region 97584	990 bp downstream