rs46827389 SNP Detail

Summary

• ID
  rs46827389
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23943599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAAGTGAG AGGTTCCTAT
  CCACAGTAGA GGTCCACCAA GGAGATATAT ATGTTAGGAA TATTTTGGAA AAAGGCCAAG
  CCACCTTAAA GGCCCACGTG ATTACTGCGA TCCAAGATCT GCATCTACAT GACATTTACT
  GCTCATGAGA ATCCATTGTT TTCTGCTGGC CTCAGGGAGC GGCTGGCACA TTACCTAATA
  R
  CAAAGAAATA CCTCCCAAAG GAATTTAGAG GAGGGATAAA ATGATCAATC ACCATCAAGA
  GAGATCACAT TTTCTTGTTC TTCTGTCTGC TCTCCTCCTG AAACTTTCCA GGATGTATTA
  TCCATGAATT ATATGCATTA GTTTAAGATG AAGCTATGCT GAATAGTTCA TTTTTCTACC
  AGAAATTCAC GGTTGGAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	MSM/Ms	SM/J
ss148808337	ENSMUSSNP641676	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
ss324291493	CHEV_13_23851485	CHEVERUD	SCREENING_POP	f	SNP		G		A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	MSM/Ms	SM/J
rs46827389					SNP	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23943599 () rs orientation: forward

Symbol	Name	Function Class
4930558J22Rik	RIKEN cDNA 4930558J22 gene	1978 bp upstream
Cpgi5376	CpG island 5376	1063 bp proximal
Gm61378	predicted gene, 61378	1832 bp upstream
H4c1	H4 clustered histone 1	1179 bp downstream
Rr388131	regulatory region 388131	1758 bp downstream
Rr388132	regulatory region 388132	180 bp upstream
Rr475944	regulatory region 475944	1488 bp distal
Rr475945	regulatory region 475945	1604 bp proximal
Tssr121748	transcription start site region 121748	1987 bp upstream
Tssr121749	transcription start site region 121749	1551 bp downstream
Tssr121750	transcription start site region 121750	1593 bp downstream
Tssr121751	transcription start site region 121751	1607 bp downstream