rs46828476 SNP Detail

Summary

• ID
  rs46828476
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121139640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTGTGTTTA GCTCTCAGGG AGGCTGTTAG CCCTCTGACT
  CCTCCTCCTG TATTCACAAT GAATTTAGAT AAAAGGTATA AGAGTAGAGA TCTTGCTTAG
  Y
  GGTGAGTGCT TGCCCGACCT TCACCAGCAA TGGAGAGAAA AAGGATTATA GGAATAAGAT
  GCAGAAATCA AATTATTAGC GTTATCAGCT AACACAAAAA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60440713	NES15939632	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46828476					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60440713	NES15939632	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121139640 () rs orientation: forward

Symbol	Name	Function Class
Alg14	asparagine-linked glycosylation 14	within coordinates
Gm33310	predicted gene, 33310	within coordinates
Rr367544	regulatory region 367544	770 bp downstream