rs46829033 SNP Detail

Summary

• ID
  rs46829033
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:3648120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGCTGCT CTCTGCGGAA
  CTATACTGTC GGGCCTGGCG CCAGGCACTG CCACAGCTCG AGCCATCCCC CAGTCCCTCT
  GCTCTGTTGG CCTTGCTGGC GAGGAGGGGC ACGGTGCCTT CACTGCCTGA GCACCCAGTG
  CGCGAGGCTG ACCTGAAACA CCAGCCAATT CTCATGGTAG GCTCTGCTCC TGACCTATGA
  R
  GCCCTGCCTA CCAGGCTTGG CTCCTCCCCT TTGCACTTTC CTGCAAAGTT TCTAGCTTGT
  GCTTGAACCT CCCTTCAGGC TCTACCCACT AATTCTCGTT ACACTCCCCA AATGGTTCCT
  CTAGCCATGC CCTCAAGCTC AGCCCATTAG GTGTAGCTCC TCCAACCAGT TTTAGCCCCT
  CCCACAAAGC TTAGCTCCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61076724	NES16055124	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A	G	A	A	A	A	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46829033					SNP	G	A	A	A	A	A	G	A	A	A	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61076724	NES16055124	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3648120 () rs orientation: forward

Symbol	Name	Function Class
Camsap3	calmodulin regulated spectrin-associated protein family, member 3	within coordinates
Rr180906	regulatory region 180906	1920 bp distal
Rr189485	regulatory region 189485	281 bp proximal
Rr381636	regulatory region 381636	within coordinates
Tssr76064	transcription start site region 76064	1596 bp downstream
Tssr76065	transcription start site region 76065	195 bp upstream
Tssr76066	transcription start site region 76066	219 bp upstream
Tssr76067	transcription start site region 76067	234 bp upstream
Tssr76068	transcription start site region 76068	251 bp upstream
Tssr76069	transcription start site region 76069	323 bp upstream
Tssr76070	transcription start site region 76070	473 bp upstream
Tssr76071	transcription start site region 76071	522 bp upstream
Tssr76072	transcription start site region 76072	1401 bp upstream