rs46829877 SNP Detail

Summary

• ID
  rs46829877
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:118355311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATACCCTT TCACTAAAGT
  AGTAGCTCTC AACATGTGCA TGGAGACCCC TCTGGGACTC TTTTGGGAGT GGAAAGACCC
  TTTCACAGGG GTCACCTAAG ATCATTGGAA AACACAAGTA TCTACATTAC TACTTATAAT
  GGCAAAATTA TGATTTTGGA ATATCAATGA AATAATTTTA TGGATGGGGA TTACCACACA
  T
  AAGGAACAGA TTAAAGGGTC GCAGCATGAG GAAGGTTGAG AACCATCTCA CTATAGGCTG
  TTCTAGACTG TGGATACTGA TGTCTGTCTG TCTTCTTGTG CCCTAGGCTC CCCAATACTA
  CTACTCCCCC AGAACAGCTT CAAAAATCCT TCCAGCCTAT TTGCTGGTGG CCAGAGGAAC
  ACAGGTACTC CCTGGTCCCT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss135697710	ENSMUSSNP897131	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs46829877					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:118355311 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13752	CpG island 13752	370 bp proximal
Dpyd	dihydropyrimidine dehydrogenase	467 bp upstream
Rr583905	regulatory region 583905	1 bp proximal
Rr583906	regulatory region 583906	529 bp proximal
Tssr31414	transcription start site region 31414	483 bp upstream
Tssr31415	transcription start site region 31415	500 bp upstream