rs46830417 SNP Detail

Summary

• ID
  rs46830417
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:127499986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGGGGAAAC GGCAATGCAG GCTGATTTTG CTCTTACTCA
  TCCCTTCCCT GTAGCAGAAT AGAAAGACAG AAACTACGGA GACATGAGAT GGAAAAGAAG
  Y
  CCCTTGCCCT GGGATCTAGT TTGCCTGTCT TACTGAGTAT TCAACACAAC TAAGAAAGCC
  AAAATTGCCC ACAGAGATAA TGTGTAATTA AAAAAATTTT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60942659	NES16167515	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46830417					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60942659	NES16167515	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:127499986 () rs orientation: forward

Symbol	Name	Function Class
Rr133159	regulatory region 133159	1415 bp proximal
Rr147640	regulatory region 147640	within coordinates
Rr151532	regulatory region 151532	1368 bp proximal
Rr380087	regulatory region 380087	1652 bp downstream