rs46830605 SNP Detail

Summary

• ID
  rs46830605
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:59997204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATGATTTC AGAAATGATG
  AATCAATAAA AGTGTTTATA GAAATAGCCT TCTGATGAAT TCCTTCAGAC TAAAATCTGT
  GGGACATGTG ATAAAGTGCG ATTTCTACCA TCAATTAGGA AGACTCCGAA ATCAAACCCA
  GCTTTCCGGA TAACCGATCC CAGATTCTGG AAGTGGGAAG GACTTCGAAG CAGCCTCTCC
  R
  AGGTCAACCA CGTCACACCT CCGACCCTTA CTCTTGAGAT GGTCAGCTTC ATTTCCAGCC
  ATGCTAATAA TAGCCAAGGG AGAATCTGAC CATAACATAT CAAGGTCATT ACGGACGCTT
  GAGAAATCAA GCAGCCTGGT GATGGGAGGT GGCACAACTT CTTGTCCTGC CTGAATGCTC
  AACCACAAAG AGAAAGCATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss136530823	ENSMUSSNP963138	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs46830605					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:59997204 () rs orientation: forward

Symbol	Name	Function Class
Rr196116	regulatory region 196116	1404 bp distal
Rr204367	regulatory region 204367	1447 bp distal
Rr209877	regulatory region 209877	within coordinates
Thsd4	thrombospondin, type I, domain containing 4	within coordinates