rs46831975 SNP Detail

Summary

• ID
  rs46831975
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:87753030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTCT CTAGCAGATG GCCTTCCCGT
  M
  TTCCCATGGT CATGCCTTTC CAGAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss144885041	ENSMUSSNP3027673	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss319829834	CHEV_1_89721883	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46831975					SNP	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:87753030 () rs orientation: forward

Symbol	Name	Function Class
Rr371669	regulatory region 371669	1044 bp upstream
Rr414853	regulatory region 414853	330 bp distal
Rr414854	regulatory region 414854	235 bp distal
Rr414855	regulatory region 414855	1750 bp proximal
Sag	S-antigen, retina and pineal gland (arrestin)	Intron