rs46834324 SNP Detail

Summary

• ID
  rs46834324
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171123127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGATC TGCCTGCCTC TGTCTCCCAA
  R
  TGCTGGTTGG GTAATTTCTA AATTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320117866	CHEV_1_173225685	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs46834324					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171123127 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1022	CpG island 1022	672 bp distal
Rr372447	regulatory region 372447	within coordinates
Rr423281	regulatory region 423281	148 bp distal
Tssr15031	transcription start site region 15031	767 bp upstream
Tssr15032	transcription start site region 15032	715 bp upstream
Tssr15033	transcription start site region 15033	543 bp upstream
Ufc1	ubiquitin-fold modifier conjugating enzyme 1	552 bp upstream