rs46835653 SNP Detail

Summary

• ID
  rs46835653
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81337497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGTTCGA GGCCAGCCTG
  GTCTACAGAG TAAGTTCCAG GACAGCCAGA GCTATACAGA GAAACCCTGT CTCAAAAAAA
  CAAAAACAAA ATAAAACAAA CCAAAACCAA ACCCCCAAAA AAGAACAGCT CTTTGCTCTT
  TGAGTATGTA ACCAAGCTGG GCAAGTACCA TCTCCCTGCC CGAAATGCAC CCTGAAGACA
  R
  CACCAGGGCC CTTGTACAAG ACAATACTCT GGGATGCTTC AGGTAGATGC AAAAATGTTG
  GCAGGCACAA AACAACAGTA GAGTCCAGCT TAGAATTCCT AAGACTCTGG CTGCCATCCC
  CAGCACCCAG ACCAAGCCAT TCTGTGTCTC AGAGTGAAGT ACTATGCAGC AGTGTAAGGA
  GATATGTCTA AGGAAGCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61292387	NES16908661	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46835653					SNP	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61292387	NES16908661	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81337497 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1995	CpG island 1995	1030 bp proximal
Gna15	guanine nucleotide binding protein, alpha 15	643 bp downstream
Rr435689	regulatory region 435689	1151 bp proximal
S1pr4	sphingosine-1-phosphate receptor 4	1531 bp upstream
Tssr98633	transcription start site region 98633	1993 bp upstream
Tssr98634	transcription start site region 98634	1950 bp upstream