rs46837522 SNP Detail

Summary

• ID
  rs46837522
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77921917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAATCTCA CACTGTGAGA
  TGTGTGTCCA CTTATTACAT GGGAATTACA TGAGGATCAA AGCAGACATT CACCTGCTCT
  TTACCAGGAC AGATCCAGAT TGCAGCTAAC AATATCTTCA CCTCGCTTGT CACTCCCAAG
  TGAGTTACAC AAACACTGTC AAGACAGACA GTCCTTTCCA AATGACAGCA GAAATCAGGA
  Y
  GTCTGCTCTC CAGTTCAAGA GTTCAGTGGA CCCATTACTT TAAAGGGAGC TTGCTTAAAT
  TTCCTGAGAG GATCTTTCTA AAATAGCTCT TTCTCTCTCC CAGCTGACTT GCAGACCTAA
  CTCTGTCAGA TTCAGGTCTG CATGACAAGC TAGCTATGCA GGGGTGAGAT GAAGGGTGGT
  AGGAGGTGGT GGTTTGAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss61428473	NES16804918	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	C	T	C	T	T	T		C	T	C		T
ss323015017	CHEV_9_77862442	CHEVERUD	SCREENING_POP	f	SNP											T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs46837522					SNP	C	T	T	T	C	T	C	T	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61428473	NES16804918	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77921917 () rs orientation: forward

Symbol	Name	Function Class
Gm23609	predicted gene, 23609	537 bp upstream
Gm39375	predicted gene, 39375	383 bp upstream
Gm69108	predicted gene, 69108	712 bp upstream
Rr683457	regulatory region 683457	578 bp distal