rs46839682 SNP Detail

Summary

• ID
  rs46839682
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:77157586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACAGAGGG TAGGCAGTAT
  TCATAATAAC TAGTGCCATG ACACTGAATA CATCTTTATA GAAATCTGAA ATGAGAATAT
  TAAAAATTAT GAAATTAGTT CATGAAAGAG ACAATTACAG AAATTATACT GTACTGATCC
  CCCCTCCATC TCTCTCCTAT CTTAGATCTT CAGGAATGTA ACTGGGATAA TTGTCCAAAT
  Y
  GAATCCCATA CCCTGTCATG GTGAGTAGAA CCATCTAAGA TGCTATTTTT TTCGTGTTTA
  TCTGTAATTT TTTTCATTGG TAATCTCAGT TTTCTGGTGA TTGGTATAGG AAATTCAAAG
  AACTGATTTC CATGTTTTAA TTCTCTTTGT GATGGAAAGG TGAATATTTG GCTAGGAATG
  CAGCTCAGTG GCTACTGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss148392294	ENSMUSSNP5638748	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs46839682					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:77157586 () rs orientation: forward

Symbol	Name	Function Class
D16Mit217	DNA Segment, Chr 16 Massachusetts Institute of Technology 217	510 bp proximal
Mir99ahg	Mir99a and Mirlet7c-1 host gene (non-protein coding)	within coordinates
Tssr139060	transcription start site region 139060	820 bp upstream
Tssr139061	transcription start site region 139061	1743 bp upstream