rs46840479 SNP Detail

Summary

• ID
  rs46840479
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141263095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGTTTTTTG TTGTTGTTGT
  CCTTTTAATC CAAATACCTA CTGCAAAAGC CTAACCACTG TTAAAAGAAC ATTCGTCTTT
  GAAGCATTTT ATGTAATGTA TTCCCAGTGT ACACCTCTTA ATCCTGTAGA ACAGTTATTA
  GTTAATGTTG TAATCAGCTA GGGAAAAGGG TAGGAAAAGG CACTCTGGTT CGGTTTAACA
  C
  AGGCATCTCG GAGTTCTTCT GTTTCTGAGG TCTACAGGGC AGAGTCTGAA CGCCATTAAG
  TTTCCTTGTC ATCTTAGTGC CTTTCCATCC CTTTCGTTTA AATGATTCAA ATTCTCTTTT
  TCCTTCCTGG CGGCGATCAC AACAAAACAC ATTCCACTAT ATGGAGAAAG AGATCTATAC
  TTAGCTCCAC AACTGAACCG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321387935	CHEV_4_141091699	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs46840479					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141263095 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15233	CpG island 15233	381 bp proximal
Cpgi15234	CpG island 15234	1635 bp proximal
Gm4123	predicted gene 4123	within coordinates
Rr1207	regulatory region 1207	977 bp proximal
Rr603787	regulatory region 603787	369 bp distal
Rr603788	regulatory region 603788	1000 bp proximal
Spen	spen family transcription repressor	within coordinates