rs46843229 SNP Detail

Summary

• ID
  rs46843229
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:91179419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGT GGGACGTGTT GAGGAGGGAA
  S
  GAGAATTCTG AGGCAGCTTC TACCC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319839840	CHEV_1_93148274	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs46843229					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:91179419 () rs orientation: forward

Symbol	Name	Function Class
Cpgi571	CpG island 571	606 bp distal
Rr366958	regulatory region 366958	1451 bp downstream
Rr415587	regulatory region 415587	1121 bp distal
Rr415588	regulatory region 415588	within coordinates
Rr415589	regulatory region 415589	166 bp proximal
Tssr8065	transcription start site region 8065	1481 bp downstream
Tssr8066	transcription start site region 8066	1387 bp downstream
Tssr8067	transcription start site region 8067	1317 bp downstream
Tssr8068	transcription start site region 8068	1189 bp downstream
Tssr8069	transcription start site region 8069	1111 bp downstream
Tssr12938	transcription start site region 12938	1622 bp upstream
Tssr12939	transcription start site region 12939	288 bp upstream
Ube2f	ubiquitin-conjugating enzyme E2F (putative)	within coordinates