rs46843583 SNP Detail

Summary

• ID
  rs46843583
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156769083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGCTCATGTT GACAGCCTGC AAAACCACAC TTTTATTACT
  CTTAAGAGCT CAGGATTTTC TAAACTTGAT AAGGTTAAGA ATTTCTGTAT GAAAATACAT
  W
  AAAAAAAAAA AAAAAAAAAC TTGGGAGAAG CTGAGATGAT GACTTAAGAG GCAAAGGTGA
  TAACCTGGCA GGCCTGAGGA TCAGAGTTCA GTCCCTACA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145809625	ENSMUSSNP2478787	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46843583					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156769083 () rs orientation: forward

Symbol	Name	Function Class
4930439D14Rik	RIKEN cDNA 4930439D14 gene	1318 bp downstream
Cpgi904	CpG island 904	1284 bp distal
Ralgps2	Ral GEF with PH domain and SH3 binding motif 2	1887 bp upstream
Rr13382	regulatory region 13382	1318 bp proximal
Rr19959	regulatory region 19959	within coordinates
Rr28786	regulatory region 28786	482 bp distal
Tssr9581	transcription start site region 9581	1824 bp downstream
Tssr14477	transcription start site region 14477	1964 bp upstream
Tssr14478	transcription start site region 14478	1898 bp upstream
Tssr14479	transcription start site region 14479	1856 bp upstream
Tssr14480	transcription start site region 14480	1473 bp upstream