rs46845474 SNP Detail

Summary

• ID
  rs46845474
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98853071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGACCACT GATAATTTGC
  AGGATGAAAT TTTAGAGGAA AAGAGATATT TGTTTGGGCA CCGAGCTAAA AATGTGGATT
  TTGACAGATG GCTTCCCTTT CAGTAGCAGA GTCTTGGTCG CCCGCAGCTC TGTTTGCGAG
  CCCTGTGGAG TCCATTCATT CCGGCTGGGC TCCCAAGGCG CAGGGCGCTG GTGTGGGAGG
  R
  AGAGCCTTGG GAACACAGCA GCTGCAGGTT GTGAGCTAAC AATGGTGGCC ATGAGTTCTT
  CTAGCCTGAG GTCCACAGCT CTGCCTTTCT TGTTTAAATT TATCGTAAAA GTCTTTTCTA
  AAGAAAAACA AAACAAAACA AATCAATATA ACCCACAAAC AAAGAATTGT CTACTTCTTG
  CATATTTCCT AGGAAAAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss63622712	NES17045866	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs46845474					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63622712	NES17045866	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98853071 () rs orientation: forward

Symbol	Name	Function Class
B430209F14Rik	RIKEN cDNA B430209F14 gene	191 bp upstream
Cpgi7685	CpG island 7685	1474 bp distal
Gm49450	predicted gene, 49450	1639 bp upstream
Gm56698	predicted gene, 56698	within coordinates
Rr370012	regulatory region 370012	1863 bp downstream
Rr404613	regulatory region 404613	1419 bp downstream
Rr509236	regulatory region 509236	1923 bp distal
Rr509237	regulatory region 509237	1650 bp distal
Rr509238	regulatory region 509238	1530 bp distal
Rr509239	regulatory region 509239	997 bp distal
Rr509240	regulatory region 509240	4 bp proximal
Tssr132971	transcription start site region 132971	1421 bp downstream
Tssr136334	transcription start site region 136334	1671 bp upstream
Tssr136335	transcription start site region 136335	1657 bp upstream
Tssr136336	transcription start site region 136336	1630 bp upstream
Tssr136337	transcription start site region 136337	1599 bp upstream
Tssr136338	transcription start site region 136338	1583 bp upstream
Tssr136339	transcription start site region 136339	1531 bp upstream
Tssr136340	transcription start site region 136340	1514 bp upstream
Tssr136341	transcription start site region 136341	1491 bp upstream
Tssr136342	transcription start site region 136342	269 bp downstream
Tssr136343	transcription start site region 136343	1957 bp downstream
Tuba1a	tubulin, alpha 1A	1689 bp upstream