rs46846376 SNP Detail

Summary

• ID
  rs46846376
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:108638900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGGTTTG GAGGGAACCC
  ATCCCCAGAC CCAGAACTTC CTAAGCAGAG GCAGAACCAG AACCATCTGG GGCCTCTTTA
  AGTTGGCTTC AACACTAACA CAGCTTCCTT TTGGTAGTTT TTTTTTCTCT CTCTCACCAC
  CTTGTAGTCT CCCTGACTTA AAGAAGCAAA CCACGAAATT AAAAACTTAA GCCTTGTCCG
  M
  TTTTCATTTA CAATAGGACC TACTTTATTT AATGTGTGCC TTTTTTTTTT TTCGTCATAA
  TCTTTACTGG TAGCCAAAAG CTTTTTAGCT TTTCCTTCGG GAAAAGTATT TGGAAAGGAA
  GACAAAAAGC CAGCATGACT GGAAGTTCTG AACAAGTGTC AGGGGGGAAA GAAAGAAAGA
  AAGAAACGCA ACACATTGGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321893492	CHEV_6_108611933	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs46846376					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108638900 () rs orientation: forward

Symbol	Name	Function Class
0610040F04Rik	RIKEN cDNA 0610040F04 gene	1005 bp upstream
Bhlhe40	basic helix-loop-helix family, member e40	within coordinates
Cpgi17812	CpG island 17812	206 bp distal
Rr399817	regulatory region 399817	57 bp downstream
Rr636156	regulatory region 636156	1055 bp distal
Rr636157	regulatory region 636157	1194 bp distal
Rr636158	regulatory region 636158	515 bp distal
Rr636159	regulatory region 636159	within coordinates
Rr636160	regulatory region 636160	1641 bp proximal
Tssr58072	transcription start site region 58072	1493 bp downstream
Tssr58073	transcription start site region 58073	1442 bp downstream
Tssr58074	transcription start site region 58074	1405 bp downstream
Tssr58075	transcription start site region 58075	1257 bp downstream
Tssr58076	transcription start site region 58076	1152 bp downstream
Tssr58077	transcription start site region 58077	1073 bp downstream
Tssr58078	transcription start site region 58078	162 bp downstream
Tssr58079	transcription start site region 58079	51 bp upstream
Tssr58080	transcription start site region 58080	400 bp upstream
Tssr58081	transcription start site region 58081	831 bp upstream
Tssr58082	transcription start site region 58082	1180 bp upstream