rs46847143 SNP Detail

Summary

• ID
  rs46847143
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18917114 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCCTGCC TCTGCCTCCT
  GAACACTGGG ACTAAAGGCA TGTGCCACCA CCACCCAGCT ACAATAATAG TTTTATTAGA
  CACTTTCAGT GGGGGTGTAT CACACTGGGG AATGATAGTG TTTCTCAAAA AGAGGCACTG
  GGACCAGCAA GCAAAGATTC AAGGAAAACA CTCAGGACTA AGAAAAAATG AGAGCCGGGC
  R
  TGGTGGCGCA TGCCTTTAAT CCCAGCACTC AGGAGGCAGG GGCAGGAGGA TTTCTGAGTT
  CGAGGCCAGT CTAGTCTACA AAGTGAGTTC CAGGACAGCC AGGCTATACA GAGAAACCCT
  GTCTTGAAAA ACCAAAAAAA AAAAAGAAAA AAAAAAATGA CTGGCCCCGG TGAGTTGGAG
  CTACTTGGGA TACTGGAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148469671	ENSMUSSNP1294075	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46847143					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18917114 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18453	CpG island 18453	1616 bp distal
Eml2	echinoderm microtubule associated protein like 2	within coordinates
Mir330	microRNA 330	1627 bp downstream
Rr643020	regulatory region 643020	1975 bp distal
Rr643021	regulatory region 643021	1581 bp distal
Rr643022	regulatory region 643022	1137 bp proximal
Tssr64797	transcription start site region 64797	1987 bp downstream
Tssr64798	transcription start site region 64798	1968 bp downstream
Tssr64799	transcription start site region 64799	1864 bp downstream
Tssr64800	transcription start site region 64800	1732 bp downstream