rs46848036 SNP Detail

Summary

• ID
  rs46848036
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:22182943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTA TTTACTTTCA ACACAGCAAA
  R
  GCTTTATTTG TACAATCTTT ACTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss60549028	NES16565550	PERLEGEN	MM_PANEL2	f	SNP	A			A	A	A	A		A	G		A	A		A
ss145294217	ENSMUSSNP1062762	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G					G
ss325322955	CHEV_17_22100929	CHEVERUD	SCREENING_POP	f	SNP											G			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs46848036					SNP	A	G	G	A	A	A	A	G	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60549028	NES16565550	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:22182943 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8665	CpG island 8665	1003 bp distal
Gm7805	predicted gene 7805	174 bp downstream
Rr405064	regulatory region 405064	1259 bp downstream
Rr523003	regulatory region 523003	1522 bp distal
Rr523004	regulatory region 523004	1393 bp distal
Rr523005	regulatory region 523005	458 bp distal
Tssr142901	transcription start site region 142901	1210 bp downstream
Tssr142902	transcription start site region 142902	366 bp downstream
Zfp942	zinc finger protein 942	1498 bp upstream
Zfp943	zinc finger prtoein 943	within coordinates