rs46848947 SNP Detail

Summary

• ID
  rs46848947
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:121576072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGCC TTGGCGCACC TGGCCGCGGC
  C
  GAGAAGGTCT ATCACAGCCT CACCT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147640116	ENSMUSSNP6565816	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46848947					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:121576072 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi2295	CpG island 2295			within coordinates
Kics2	KICSTOR subunit 2			Coding-Synonymous
				mRNA-UTR
Rr440270	regulatory region 440270			219 bp distal
Tssr96047	transcription start site region 96047			202 bp downstream
Tssr99640	transcription start site region 99640			144 bp downstream