rs46849027 SNP Detail

Summary

• ID
  rs46849027
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:15672303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CTGCCAGGTC ATATTTCTGG CACTTTATTC AAAATGACTT
  GACAGGTCAT GTAAAAGCTG TAGGTTTTTG TACATATTTT TATTAGTATT TTCTTCCTTG
  K
  CTCAGATCAG TATCAGAAAA TAGTTGCCGT GGCTCCTGCA CCCAGTCTAT TGTTTGGTTC
  CAAGGCTAAG GAAAGAGTGC ACACAAACAT GTGCACCACA G                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148701518	ENSMUSSNP6880581	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46849027					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:15672303 () rs orientation: forward

Symbol	Name	Function Class
Gli3	GLI-Kruppel family member GLI3	within coordinates
Rr2093	regulatory region 2093	862 bp distal
Rr2094	regulatory region 2094	within coordinates
Rr388026	regulatory region 388026	1957 bp upstream