rs46849828 SNP Detail

Summary

• ID
  rs46849828
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110767005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGA TAGACTGATT TGTGACAAGG
  R
  ATATCACTAA CCGCAGTGCC CCCAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss136960245	ENSMUSSNP2560558	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss323194870	CHEV_9_110840441	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs46849828					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110767005 () rs orientation: forward

Symbol	Name	Function Class
Cripto	cripto, EGF-CFC family member	1671 bp downstream
Rr192786	regulatory region 192786	205 bp distal
Rr192787	regulatory region 192787	596 bp proximal
Rr202609	regulatory region 202609	1733 bp distal
Rr202610	regulatory region 202610	238 bp distal
Rr207413	regulatory region 207413	5 bp distal