rs46849966 SNP Detail

Summary

• ID
  rs46849966
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78354995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTACTAGC AACAAAAGAC
  TGGCATTCCT TTAAAGTAGG GACAGAGCAC TTTGTAGGAG TTACACATTT TTTAATTCTC
  CATGTCTTGT GTGTATATTA TGTTTAAATA GGAACCAGAG AAATGGCTCA GTGAACAAGA
  TCTCTTGCTC TTTGCAGAGA ACCTGCCGTG TTTGATTCTC AGCACCCACA TAGTGGCTCA
  Y
  AACCTTTTAT TGCTCCAGAA AATCTGATGC ACTCTTCTGA CTTTTGTGGG AATAGGCTAG
  ATCGAGGCGC GCGCGCACAC CCACACACCC ATACACCACA TGCACAGGCA AAACAATCAT
  ACACATAAAA TAAATGTCAA AAAAATGTTT AAGCTGTATA TAAATAATGG AGTTTTGATT
  TGGAGACGTG ATATTCATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61427225	NES16810945	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46849966					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61427225	NES16810945	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78354995 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22068	CpG island 22068	267 bp proximal
Gm17324	predicted gene, 17324	152 bp downstream
Mto1	mitochondrial tRNA translation optimization 1	377 bp upstream
Rr401544	regulatory region 401544	324 bp upstream
Rr683554	regulatory region 683554	5 bp proximal
Rr683555	regulatory region 683555	1063 bp proximal
Tssr86287	transcription start site region 86287	479 bp upstream