rs46850270 SNP Detail

Summary

• ID
  rs46850270
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:130971421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACATCGTG TAGGGAAATA
  TAGTGTATGT TCATGGTACA AGCATTTGAC GGGGTGTGTC CAGTTACACA AGTGCATACA
  GAGGGCAGAG GGAAGCCATT CCTGTCGGTT GCCTTGAGAT GGGGTTTCAC CCGGGTTTTC
  ACAGCTCTCT GGGTACACCT GTCTCCAACC TGAAATGTTG GGTTACAGGC ACAAGCAGCT
  Y
  TGCTATTCAC ACCTTCTGAC ATGGTACATG GTAGAAGAAG AAAATAGTAG GGATAAATAA
  ATTCATATTA CATTGTATAC CTGTGTGGAA TTCTCAAGAA TAAAGGATTT GTTAAGAATT
  AGTTGAATGT GTTATATATA TATAATATTT CATATTAAAT ATATTATATA TATATACACA
  TATATATTCT CCCAAAATAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61067234	NES16057273	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46850270					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61067234	NES16057273	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:130971421 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19815	CpG island 19815	1232 bp proximal
Gm73326	predicted gene, 73326	350 bp downstream
Pstk	phosphoseryl-tRNA kinase	1422 bp upstream
Rr400669	regulatory region 400669	1276 bp upstream
Rr656446	regulatory region 656446	1013 bp proximal
Rr656447	regulatory region 656447	1398 bp proximal
Tssr69565	transcription start site region 69565	1446 bp upstream
Tssr69566	transcription start site region 69566	1503 bp upstream