rs46851017 SNP Detail

Summary

• ID
  rs46851017
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:118531630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTCATCT GCTGAATATA
  TCTGACTGTC CCTGAGGACA CAGTCTCGCC ATGGGCCAGC CCCAGTCATG GTCCCAGGCC
  CTAAGTAACC TCCCTCATGT TCCTGCCTTC TGGAAATGGT TCCCCACCAG ACTCCTGCTT
  TGGGATAGTC AGCTCAGAAT AAATACCTGG TACATGGAAC CATGTTGGAA TGGCTACCTG
  Y
  GCTAGCTAGC ACCTGGATCA CAAGGAGTTT CTCTTACAGA GTGGAGCTCG TATCTCTGAG
  AAACCAGTAA ATGGTGTTAG GAGAAAGTGG GCAGGAGAGC TTGGGACAGG AACAAACATC
  CCGTGGCTAC TTCTATGATA GGTGGTGTCA CCCAGACCAG CGGTGACTGC TCCTCATCAG
  GCAGTACCCA GGGAAGTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss61229497	NES16855735	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs46851017					SNP	T	T	T	T	T	T	C	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61229497	NES16855735	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:118531630 () rs orientation: forward

Symbol	Name	Function Class
Itga9	integrin alpha 9	within coordinates
Rr688309	regulatory region 688309	1085 bp distal
Tssr87646	transcription start site region 87646	786 bp upstream
Tssr87647	transcription start site region 87647	813 bp upstream
Tssr87648	transcription start site region 87648	829 bp upstream
Tssr87649	transcription start site region 87649	873 bp upstream
Tssr87650	transcription start site region 87650	915 bp upstream
Tssr87651	transcription start site region 87651	933 bp upstream
Tssr87652	transcription start site region 87652	1210 bp upstream
Tssr91958	transcription start site region 91958	693 bp upstream