rs46851547 SNP Detail

Summary

• ID
  rs46851547
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:14929088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAAAAATG TCACTTAAAA
  GATCCACCAT TAAGGGCTGG AGAGATGGCT CAGCAGTTAC GAGCGCTGAC TGCTCTTCCA
  GAGGTCCTGA GTTCAATTCC CAGCAACCAC ATGGTGGCTC ACATCCATCT GTAATGGAAT
  CTGATGGCTT CTTCTGGTGT GTCTGAAGAC AGCTACAGTG TACTCATATA CATTTAAAAA
  R
  AAGTCCACCA TTAAATAAAG GCTCAGAATC GGATTTGCAT CACATCTTGT TTAGTTTTCC
  TCTTTGTCTG TCTCTGCTTA CTTTGCACTA AAAATATTGT TTTCTTTGTA GTTCCATTTT
  TCTTCCAGGT AACTGAAACA ACCGAAGCAT TGCCTTCCCA GGAACACTTT TGCCTAAGGC
  CTGAGTGTCA GCTGTCTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321046995	CHEV_4_14856235	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs46851547					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:14929088 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14053	CpG island 14053	749 bp proximal
Gm11837	predicted gene 11837	820 bp upstream
Gm68732	predicted gene, 68732	639 bp downstream
Rr589248	regulatory region 589248	273 bp proximal
Rr589249	regulatory region 589249	774 bp proximal
Rr589250	regulatory region 589250	1362 bp proximal
Rr589251	regulatory region 589251	1599 bp proximal
Tssr36545	transcription start site region 36545	772 bp upstream
Tssr36546	transcription start site region 36546	1531 bp upstream
Tssr36547	transcription start site region 36547	1621 bp upstream