rs46851965 SNP Detail

Summary

• ID
  rs46851965
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:56323638 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCGTCCTTA GGCTGCAGCC
  CCGGGAGGCC AGGGCTACGT GTCCGGAGCA GAGCCTGACC TCAGCCCTAC TGTTGCAGAT
  GTCCTTGGCC AGCAGGACCC CGAAGGACCA GGGCATGTGC CACGTGCTGG AGCAGGTCTG
  CAGTGTGCTC AAGCAGGGGA GCTGAGGCTG CATAGGCTTT GCTGTCCTGG GACAGGCTGG
  R
  TAATAAAGTC TCTGAGTGCC CACAGCACAA GCCTGTGGCT GGGGTGGGAT GGCAGTTGTT
  GGGGTTTTTT CGGGGGAACA GGGCTTCCCT GAATGAAGAT GGGACAGTGG CTATATAGAA
  AGAGATATTT AATACTTTTT TTTAAAAAAA AATTAGGAGT ACAGTTCATT TCAGCACAGG
  CTGGAGCAGG ACAGTGTTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62801324	NES17365477	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46851965					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62801324	NES17365477	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:56323638 () rs orientation: forward

Symbol	Name	Function Class
Mpnd	MPN domain containing	within coordinates
Rr332114	regulatory region 332114	1838 bp distal
Rr332115	regulatory region 332115	1563 bp proximal
Sh3gl1	SH3-domain GRB2-like 1	112 bp downstream
Tssr148733	transcription start site region 148733	802 bp downstream