rs46852054 SNP Detail

Summary

• ID
  rs46852054
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:91051994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTAGCGCC ATGGCCCCTC
  CCACCTGCCG GCTCCTCAGT GCTGCACTGG TCCTGCTGCT GCTGCTGGCC ACCAACCACC
  AGGCTACAGG TGGGATTCGG ATTCGAGGCT GATGTTTCTG GGGAAGCCTC AGGTGGGCGC
  AGCCATCCCC AGCCCTTCTG ACCCAGTGTC TTCTCCTACA GGGGCTGTTG TGGCCAGTGA
  R
  CTGCGCTGTC AATGCCTGAA GACCCTGCCA AGGGTTGACT TCAAGAACAT CCAGAGCTTG
  AGTGTGACGC CCCCAGGACC CCACTGCGCC CAGACAGAAG TCATGTGAGT GTCTCCCTGG
  ATAGCCTCTG CCATGGCCAG AGTTGCCCAG ACCCTCCTGC CGCCCCATGC TCACCCTAAA
  GAAACCTCGT GCCTTATAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61198267	NES16702725	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46852054					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61198267	NES16702725	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91051994 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	within coordinates
Gm73232	predicted gene, 73232	931 bp upstream
Tssr47224	transcription start site region 47224	426 bp downstream
Tssr47225	transcription start site region 47225	324 bp downstream
Tssr47226	transcription start site region 47226	255 bp downstream
Tssr47227	transcription start site region 47227	61 bp downstream
Tssr47228	transcription start site region 47228	within coordinates
Tssr47229	transcription start site region 47229	4 bp upstream
Tssr47230	transcription start site region 47230	29 bp upstream
Tssr47231	transcription start site region 47231	49 bp upstream
Tssr47232	transcription start site region 47232	214 bp upstream
Tssr47233	transcription start site region 47233	231 bp upstream
Tssr47234	transcription start site region 47234	303 bp upstream
Tssr47235	transcription start site region 47235	1053 bp upstream
Tssr47236	transcription start site region 47236	1073 bp upstream
Tssr47237	transcription start site region 47237	1122 bp upstream
Tssr47238	transcription start site region 47238	1128 bp upstream
Tssr47239	transcription start site region 47239	1188 bp upstream
Tssr47240	transcription start site region 47240	1200 bp upstream
Tssr47241	transcription start site region 47241	1215 bp upstream
Tssr47242	transcription start site region 47242	1252 bp upstream
Tssr47243	transcription start site region 47243	1275 bp upstream
Tssr47244	transcription start site region 47244	1309 bp upstream
Tssr47245	transcription start site region 47245	1329 bp upstream
Tssr47246	transcription start site region 47246	1380 bp upstream
Tssr47247	transcription start site region 47247	1424 bp upstream
Tssr47248	transcription start site region 47248	1487 bp upstream
Tssr47249	transcription start site region 47249	1557 bp upstream
Tssr47250	transcription start site region 47250	1695 bp upstream
Tssr47251	transcription start site region 47251	1759 bp upstream
Tssr47252	transcription start site region 47252	1811 bp upstream
Tssr51810	transcription start site region 51810	992 bp upstream
Tssr51811	transcription start site region 51811	938 bp upstream
Tssr51812	transcription start site region 51812	66 bp downstream
Tssr51813	transcription start site region 51813	98 bp downstream
Tssr51814	transcription start site region 51814	1072 bp downstream
Tssr51815	transcription start site region 51815	1106 bp downstream
Tssr51816	transcription start site region 51816	1140 bp downstream