rs46852311 SNP Detail

Summary

• ID
  rs46852311
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:160943271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tagatattt tatttaCCAT TAGTGTGATC
  TGTGTGCAGG ATCACACATG CACGCGCACA CGCACTCGCA tgcacgcgca cacaccccac
  ttgggattgg aaatcgggga tagcgtcctg aagctggttt tctccttcca cagtggactc
  K
  ggggctaaac cgcggccatc aggcttgagc gtcaagtgcg cacctgctac accaccttgc
  cagccccAAC CTTCCCGTAT TATCTCTTAG TTTCTGAAAC ATAGTTAAGG TTTTATTATC
  TTTAAAAAGG TTATTTCAGT TAATAGATGA                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145906454	ENSMUSSNP2385558	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss320080357	CHEV_1_163045832	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46852311					SNP	T	T	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:160943271 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Klhl20	kelch-like 20			Intron
				Noncoding-Transcript-Variant
Rr421756	regulatory region 421756			837 bp distal