rs46853042 SNP Detail

Summary

• ID
  rs46853042
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72534063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGGAGGCA GAGGCAGGCA
  GATTTCTGAG TTCGAGGCCA GCCTGGTCTA CAAAGTGAGT GCCAGGACAG CCAGGGCTAC
  ACAGAGAAAC CCTGTCTCGA AAAAACAAAA CAAAACAAAC AAACAAACAA AAAAATATGT
  ATTGTTTGAG TCTGGGGAGG GGGAGGGGAA AAACATGTGA CTGCAGATAC CAGCAGAGCC
  Y
  GGAAGAGGGG CACCAGAGTT GGAGTTATAA GCAGTTGTGA ACTGCCTATT GTGGGTGCTC
  AGAACAGAAC TCAGGTCCTC TTAGAAGAGC AGTGTGTACT CTTGACCACT GAGTCACCTC
  TGTAGTAACC TCAGGACATA ATTTATAAAC AAGATAAAAA CGGTAAAATA TATGGTGGTC
  GGTGATGTGG AGGAAAACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133285586	ENSMUSSNP5821924	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss321822107	CHEV_6_72507074	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46853042					SNP	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72534063 () rs orientation: forward

Symbol	Name	Function Class
Capg	capping actin protein, gelsolin like	within coordinates
Tssr57142	transcription start site region 57142	1277 bp downstream
Tssr57143	transcription start site region 57143	1251 bp downstream
Tssr57144	transcription start site region 57144	962 bp downstream
Tssr57145	transcription start site region 57145	922 bp downstream
Tssr57146	transcription start site region 57146	903 bp downstream
Tssr57147	transcription start site region 57147	254 bp upstream
Tssr57148	transcription start site region 57148	1593 bp upstream
Tssr57149	transcription start site region 57149	1686 bp upstream
Tssr61469	transcription start site region 61469	709 bp downstream