rs46853315 SNP Detail

Summary

• ID
  rs46853315
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117013520 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACGCGGACCC CGCCTCAAAT CCCTTGACCT TGGGCGGTCT
  GGAGGGCGGG CTCCTTAAGC TGAGCTATAG GGCACACTTG CCTGCCTGTT GTGCTTACAT
  Y
  TTGTCCTTTA AATTTTTTTT TTTTTTTTTT TTTTTAAACC GGGCGTGGTG GCGCACGCCT
  TTAATCCCAG CACTCGGGAG ACAGAGGCAG GCGAATTTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147285280	ENSMUSSNP6693324	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46853315					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117013520 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14653	CpG island 14653	within coordinates
Gm26330	predicted gene, 26330	1034 bp upstream
Gm55786	predicted gene, 55786	1986 bp downstream
Rps8	ribosomal protein S8	191 bp upstream
Rr377051	regulatory region 377051	1811 bp downstream
Rr398411	regulatory region 398411	103 bp downstream
Rr598069	regulatory region 598069	within coordinates
Snord38a	small nucleolar RNA, C/D box 38A	1749 bp upstream
Snord55	small nucleolar RNA, C/D box 55	475 bp upstream
Tssr42956	transcription start site region 42956	475 bp upstream
Tssr42957	transcription start site region 42957	238 bp upstream
Tssr42958	transcription start site region 42958	180 bp upstream
Tssr42959	transcription start site region 42959	149 bp upstream
Tssr42960	transcription start site region 42960	126 bp upstream
Tssr42961	transcription start site region 42961	96 bp upstream