rs46854748 SNP Detail

Summary

• ID
  rs46854748
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:180596897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTAA AAAATTACAC TGGTGGGGCT
  R
  GAGATGTGGC TCAGCGGCTA AGAAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146385906	ENSMUSSNP3666744	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46854748					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180596897 () rs orientation: forward

Symbol	Name	Function Class
5830405M20Rik	RIKEN cDNA 5830405M20 gene	within coordinates
Cpgi1118	CpG island 1118	556 bp distal
Gm38293	predicted gene, 38293	676 bp upstream
Rr424564	regulatory region 424564	697 bp distal
Rr424565	regulatory region 424565	1546 bp distal
Rr424566	regulatory region 424566	1232 bp distal
Rr424567	regulatory region 424567	182 bp distal
Rr424568	regulatory region 424568	106 bp proximal