rs46856666 SNP Detail

Summary

• ID
  rs46856666
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:21423292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAGC ACCCCGGCGC GTCCCTCCAA
  K
  CACTCTGGGG TCAGATAAGT CAGTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52314568	NES15371782	PERLEGEN	MM_PANEL2	f	SNP	T	G	G	G	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46856666					SNP	T	G	G	G	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52314568	NES15371782	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:21423292 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Adam17	a disintegrin and metallopeptidase domain 17			Intron
				Noncoding-Transcript-Variant
Cpgi4477	CpG island 4477			within coordinates
Gm49586	predicted gene, 49586			382 bp upstream
Rr463712	regulatory region 463712			127 bp proximal
Rr463713	regulatory region 463713			238 bp proximal
Rr463714	regulatory region 463714			252 bp proximal
Rr463715	regulatory region 463715			393 bp proximal
Rr463716	regulatory region 463716			432 bp proximal
Rr463717	regulatory region 463717			920 bp proximal
Tssr112932	transcription start site region 112932			399 bp upstream
Tssr112933	transcription start site region 112933			961 bp upstream
Tssr115856	transcription start site region 115856			190 bp downstream
Tssr115857	transcription start site region 115857			210 bp downstream
Tssr115858	transcription start site region 115858			235 bp downstream
Tssr115859	transcription start site region 115859			259 bp downstream
Tssr115860	transcription start site region 115860			315 bp downstream