rs46856953 SNP Detail

Summary

• ID
  rs46856953
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31095562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACAAACTT CATTCTTTCT
  ATTCTGGAGG AGGAGCCATT CCAAATCACT CCCATTCCTC TCTCCTTCCC TGATCAGAGA
  TGTGATGGGA GACCAAGCAA GGTGACCCAG TGCTAACCTC AGAGGAAACT GACATTCCTT
  CTGGAAGTAG AATATAGTGA TAACCTCTGA TAAGTCCCTA ACGCTATTGC TTCCTCTCTG
  Y
  TGCTGGCCAA AAGCACCTTA GGGGAAGACA GGTTTCATTT GGATTACAGT TCCAGGTCAC
  ACAGTCCATC ACTGAGGGGA GTCATAGTAG GAAGTGTTCC TACTCGAACC ATGCATGATC
  ATTGCCTGCC TCTGTGGCTT CTTCACAGGC TCATGCTTGC TTTAGATAGT TTTCTCAGAC
  AGCTCAAGAC CACTTGCCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	PWD/PhJ	WSB/EiJ
ss60563338	NES16495472	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	PWD/PhJ	WSB/EiJ
rs46856953					SNP	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60563338	NES16495472	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31095562 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8937	CpG island 8937	1876 bp distal
Dnah8	dynein, axonemal, heavy chain 8	826 bp downstream
Gm9937	predicted gene 9937	1304 bp upstream
Gm50252	predicted gene, 50252	within coordinates
Rr330583	regulatory region 330583	1762 bp distal
Rr334765	regulatory region 334765	1839 bp proximal
Rr337287	regulatory region 337287	978 bp proximal
Rr341200	regulatory region 341200	1562 bp distal
Tssr147267	transcription start site region 147267	1552 bp upstream