rs46857198 SNP Detail

Summary

• ID
  rs46857198
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:48213580 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAATATAG CCTGTTTCTC
  TCCCAAAACA AATAACTACA TATAATTATA CATGTGTCTA TTTACTTATT ATATGGAGTC
  ATGAAATTAG AAAAGAGGCC GTGGGAGAGG AAGAACTATT AAGTGTGGGA AAGGAGAGTG
  AATGGAGCAC ATGGTAAGAA AGCAGGAGTT CTGCGGCATC CTGAGGAAGT CAGAGAGTAA
  M
  CCAGAGGTGG CCGTGGGACC TGGGACAGCA GTGGGGAAGG GAGATTAGAA TGACCAACAT
  TTATAAAAAT GCTGTAATGA TTCCATTGCC CTGTATATTT GTCTTGGTTA CTTTTCTATT
  GCTGTGACAA AACACCATGA CCGAGGCAAC TTATAGAAGA AACCATTTAA CTTGAGGGCT
  TACACTTCCA GAGGATTAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61394749	NES16768420	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46857198					SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61394749	NES16768420	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:48213580 () rs orientation: forward

Symbol	Name	Function Class
Nxpe4	neurexophilin and PC-esterase domain family, member 4	within coordinates
Rr383325	regulatory region 383325	590 bp upstream