rs46857488 SNP Detail

Summary

• ID
  rs46857488
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60960608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAATTTGTG ATAGGCTTAT
  CGCAACCTGA CTTGCAGTCT ACTCATCTAT TTATCTCCCT GACTACAAAG TTGGGTAGGA
  CTGTTCTTTT TTGTTTTGGT TTTTTTAAAG CTCTGCCTTT ATCCCTACTT ACTAAGCCAG
  AGTGTTTTTA AAAGCTAGTT CATTTGGATA GTTTGTTATT AACTCAACAT TTTTATGGCA
  W
  CAAGGTGGCA TAAATTTGGG TAAATGCACA GTTCATTATT CCCAGTGAAC TTATAATCTA
  AAGGGAAATG TATCTACATT TTAAATTACT TTCTGTGCTT TATCTGCACA TGTATCGGTA
  TATCTCATAC ATGCCTAGTG CCAGAGGAAG TCAGAAAAGA ACATGGAATG CCCTGTAATT
  GGAGTTAGAG ATGGTTATAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52343477	NES15282544	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A		A	A	A	T		T
ss323327718	CHEV_10_60587577	CHEVERUD	SCREENING_POP	f	SNP											T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46857488					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52343477	NES15282544	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60960608 () rs orientation: forward

Symbol	Name	Function Class
Gm55864	predicted gene, 55864	308 bp downstream
Sgpl1	sphingosine phosphate lyase 1	within coordinates