rs46857518 SNP Detail

Summary

• ID
  rs46857518
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53766667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCTTTTC TCTCATACAG
  TGTTTCTTGG GCCCCATCCT CTCAAGTGTC CTTAGTCTGC CAAACACACG CTCCCTTATC
  CTTATGAAAT CCCCTGCATC TTGACCAGTG AGGTTGTAAT TCTGTTACAC AATGAAAAGA
  ATTTTAATTC AAGAAAAAAC TGTTGACACA ACTCTCCCAG TTTCTCATAC TAAGCCACAA
  A
  CTCAAAGATG AAAATATTCT CCCAAAACCT CCAGTTTCGT ACCAAAGACT TAGAGCTTCT
  AGAGGCAATC TGAAGCACTT TATGTAACTA CCACTTATTC TCACTTAATC CCACTGCAGA
  GGAGTTTGCA GATTTGATGG ATATCCTTTT CAGAGGCAAT AGTCCTGATT AGTCCTGCTG
  GACCACCTCT GCGGCAGCTT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss137758497	ENSMUSSNP5301822	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs46857518					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53766667 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr256685	regulatory region 256685	within coordinates
Rr263732	regulatory region 263732	21 bp proximal