rs46858586 SNP Detail

Summary

• ID
  rs46858586
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166629179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTT GCCTCCGCCA CCCCCCCCCC
  A
  AAAAAAGTGT CTCAGCTATT ACAAA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148258933	ENSMUSSNP5242814	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs46858586					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166629179 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12724	CpG island 12724	233 bp distal
Gm74818	predicted gene, 74818	485 bp upstream
Rr570379	regulatory region 570379	496 bp distal
Rr570380	regulatory region 570380	within coordinates
Tssr27711	transcription start site region 27711	467 bp upstream