rs46859460 SNP Detail

Summary

• ID
  rs46859460
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:37513947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CACATACCAC AGTATTTCTG TGAGCTTTAC TAGTTTCTAA
  AACGGTCGTG TGCTGTAATA TAGTGAGTCA GAAAGAGGAA GTTAAAAGGC TAAAAAAATT
  W
  AAAAAAAAAA AAAAAGGCGA CTACTTCTTC TTCATTTGAA TGATCTGTCC TAGCTTTTCT
  GTCTCCTCTC ATCTGCAGAT GACAGCAGAC ATTCCCACAC A                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss148941545	ENSMUSSNP3751279	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs46859460					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:37513947 () rs orientation: forward

Symbol	Name	Function Class
Mgat4a	mannoside acetylglucosaminyltransferase 4, isoenzyme A	Intron
Rr396000	regulatory region 396000	within coordinates
Rr409535	regulatory region 409535	1163 bp distal
Rr409536	regulatory region 409536	within coordinates
Tssr11302	transcription start site region 11302	589 bp downstream