rs46860840 SNP Detail

Summary

• ID
  rs46860840
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:100749839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAGGCCAC TGGCAGCTTT
  GCATGTTGAT GTTCATCTGG AGCGGAGGGT CTAACTGGCT CCCGGTCAAT CCATTGTACA
  GAGTAGAGGG GAAAGACGGG AAAAGGCTTA TGCCTACTCC TCCTGAGCCC CTTACCCTAC
  CTGGTCCTGG CAGAGCATCT GAAGAGCAAG GTCTCTCCCA TCCTCTGATC CTCCTTGCAA
  M
  CCCCCCCCCC CCCTGTTTTC AATTCCTTTC CTCGTGATCC TGCCAAGTAA AGTCACTGTG
  ACCACACACA GAGGGCGGGG ACAGCCCAGA CATTTCAACT TCTGCAGAAA AGGTTCAGGT
  TTTCCCCACC TCTAAAGTTG AAAAAAAAAA AAAAAAGAGT AAAAGAGGAG GTCCAAAGAC
  CAGAAAGAAG GATCAGGAAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132723681	ENSMUSSNP3697518	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46860840					SNP	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:100749839 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3835	CpG island 3835	1180 bp proximal
Gm72578	predicted gene, 72578	within coordinates
Rr456792	regulatory region 456792	within coordinates
Rr456793	regulatory region 456793	981 bp proximal
Rr456794	regulatory region 456794	1116 bp proximal
Rr456795	regulatory region 456795	1513 bp proximal
Stat5a	signal transducer and activator of transcription 5A	338 bp upstream
Tssr104969	transcription start site region 104969	440 bp upstream
Tssr104970	transcription start site region 104970	479 bp upstream
Tssr104971	transcription start site region 104971	856 bp upstream
Tssr104972	transcription start site region 104972	1098 bp upstream
Tssr104973	transcription start site region 104973	1165 bp upstream
Tssr104974	transcription start site region 104974	1257 bp upstream
Tssr104975	transcription start site region 104975	1279 bp upstream
Tssr104976	transcription start site region 104976	1313 bp upstream
Tssr104977	transcription start site region 104977	1336 bp upstream
Tssr104978	transcription start site region 104978	1405 bp upstream
Tssr104979	transcription start site region 104979	1434 bp upstream
Tssr104980	transcription start site region 104980	1634 bp upstream