rs46860880 SNP Detail

Summary

• ID
  rs46860880
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:151352407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCAAAGAA AATTGAATGA
  ATTTGTGATA GATATAATAT TAATGGGTGA AATTAACACA ACATGTCAAG TTGACTCTTT
  CCAACAAGGT ACCCAGGAGT CACTGTGAAG AGGGTTAGTG GCTCAGTCTC TGATTGCTCC
  CAGAAATCCA GGTTAGTTGA CTAACCTGGA AGTTCACACC TTCTTGCCTG ACAGAGATGT
  S
  ACCAGAAAAA CATTTAACCT TTAGCTTTCC TCCTGCTTCC CAGGATGTTG GTTCTAATCT
  AAACACACAG ACAGGAATCT AGTTAGCACA GCCATCCTCT GAGAAGCTCT ATCCAGCAGC
  TGACTGAAAC AGATGCAGAT ACTCACATCC AAACATTGGA TGGAGGTCAG GGACTCTTAT
  GAAAGAGTTG GCGGAAGGAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60861244	NES15995700	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	G	C	C	C	C	G	C	C	C	C
ss144728560	ENSMUSSNP2371158	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46860880					SNP	C	C	C	C	G	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60861244	NES15995700	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:151352407 () rs orientation: forward

Symbol	Name	Function Class
D730045B01Rik	RIKEN cDNA D730045B01 gene	732 bp upstream
Gm3704	predicted gene 3704	within coordinates
Gm42906	predicted gene 42906	779 bp upstream
Rr117371	regulatory region 117371	1807 bp distal
Rr378823	regulatory region 378823	575 bp upstream
Tssr54686	transcription start site region 54686	780 bp upstream
Tssr54687	transcription start site region 54687	755 bp upstream