About   Help   FAQ
rs46861647 SNP Detail
Summary
  • ID
    rs46861647
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr2:121947453 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          GACAT GAGAACAGTA GAAAGCTGGG
    W
    TGGAAGTACG TGCTTATAAT TCCAG                                      
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
DBA/2J
LG/J
SM/J
ss147409330 ENSMUSSNP2626867 ENSEMBL ENSEMBL_Sanger f SNP T T T
ss320487088 CHEV_2_121942708 CHEVERUD SCREENING_POP f SNP A T
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
DBA/2J
LG/J
SM/J
rs46861647 SNP T T T A T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:121947453 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi12168 CpG island 12168 985 bp proximal
Gm75635 predicted gene, 75635 1563 bp upstream
Rr55508 regulatory region 55508 347 bp proximal
Rr58060 regulatory region 58060 253 bp distal
Rr373779 regulatory region 373779 424 bp upstream
Spg11 SPG11, spatacsin vesicle trafficking associated within coordinates
Tssr19802 transcription start site region 19802 37 bp downstream
Tssr19803 transcription start site region 19803 1567 bp upstream
Tssr25950 transcription start site region 25950 1345 bp downstream
Tssr25951 transcription start site region 25951 1392 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/17/2024
MGI 6.24
The Jackson Laboratory