rs46861840 SNP Detail

Summary

• ID
  rs46861840
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146156072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCATGAAA TGGTGTAGAG
  TGATGTAGAG TGATGGAGAG AATAAAAGTG GTAGAGTTAC CTGCGAGTTA CCCGGGTCAA
  GACTGTTTAC CTAGCCCTTC CTAGCACTGG AGTGTAAGGA AGACCCCTGT CACATCTTAC
  ATTTACTCAT AGGTAGTGCC CCCAGCAGCC GGGGTGGGAT CCCAGTCAAT TGGCTGCAAG
  Y
  CCCACTTCTC CACAAAGTCC AGCATCAGCC CCGCCTTCTA GGGCCCACCT ACCAAGCAGC
  AGGCTGGGTC GCTCTCCGTT TAGCATCAGG CCACGCCCCT CAGCAGAGAC TCCGCCCCGC
  CTGCCCATAG GACATCAGGG CCCGCCCTTC AAGAGGCGTC ATTCCCGCAG CCTCCACCCC
  AGGCATGGCG CTGTGTGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss136044561	ENSMUSSNP6419976	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs46861840					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146156072 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13919	CpG island 13919	12 bp proximal
Ctbs	chitobiase	132 bp upstream
Rr398117	regulatory region 398117	within coordinates
Rr587029	regulatory region 587029	within coordinates
Rr587030	regulatory region 587030	1135 bp proximal
Tssr32348	transcription start site region 32348	150 bp upstream
Tssr32349	transcription start site region 32349	201 bp upstream
Tssr32350	transcription start site region 32350	1306 bp upstream