rs46862315 SNP Detail

Summary

• ID
  rs46862315
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:92490171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAAAGGCT GTTGGGGGTG
  ACTGTTTTTG CCATCAGAGA CAGAAACTGG CAGGAACAGT CTCTCATTAC CTCACATTCT
  ACTAAAATTA TGTGGAATTC TCTACTTTCC TACTCATATG TTAAATAAAA TACTTCTACA
  AGATCAATTT TAAAAAATCT ATTTTCAAAA TGCAAAATTA TAGAAGGAAG AGGAGTAATA
  R
  ACGACCAATG TATTTCCTGT TTCAAAGCTT CCATTCACTA TTAAAAGATG TCCTGAGACT
  ATCTGTTGGC AGATAATCTA TGAAAAACTT AAAACTTTTG CCTAATATCC TCTCAGTGGT
  GAGTGCAAAA TGAATCTTAG TGAATGTACA GAAATAAAAA AAAAGCCTTA AAAAGAGAGA
  GTAGAGCATT AGTCAGTATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss52680820	NES15522602	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs46862315					SNP	A	A	A	A	A	A	G	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52680820	NES15522602	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:92490171 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi5933	CpG island 5933			710 bp proximal
Dhfr	dihydrofolate reductase			1120 bp upstream
Msh3	mutS homolog 3			Intron
				Noncoding-Transcript-Variant
Rr403896	regulatory region 403896			837 bp upstream
Rr483661	regulatory region 483661			573 bp proximal
Rr483662	regulatory region 483662			854 bp proximal
Rr483663	regulatory region 483663			1004 bp proximal
Rr483664	regulatory region 483664			1312 bp proximal
Tssr120622	transcription start site region 120622			1085 bp upstream
Tssr120623	transcription start site region 120623			1476 bp upstream
Tssr120624	transcription start site region 120624			1523 bp upstream
Tssr120625	transcription start site region 120625			1549 bp upstream
Tssr120626	transcription start site region 120626			1576 bp upstream
Tssr123429	transcription start site region 123429			840 bp downstream
Tssr123430	transcription start site region 123430			1280 bp downstream