rs46862489 SNP Detail

Summary

• ID
  rs46862489
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:21319732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCAATACT ACAGCTTGGT
  TGAGGGGTAT TTGCTAAATG CATTATTTAC ACATATACAG ATTTGAATGG TAATTTTCAA
  ATTTAAAGAA AGCATAATCT TTCTATATTA AAAAAGAAAA AGCTAAGAGC ACTGCAGCAA
  AGTCATTTCT CTGACTGGTA TGACCTCCAG TGTCTACAAA CTACTGATTT CGCAATAAAT
  K
  ACTCTGAGAC TCAATCCACG TACACACAGA AAAGAAGTGG AGAGCTTCCT ACTAGTCTTG
  ACAAACGCAT CTGCCTGTCC CTAGCCCTCT GGGTTTCCTT GTCCCACAAA GATAACTAAC
  TTATCATCGA GTGCAAGAAG GGAACAAGAA TTAATCAGCA GTCAAAAATC CTGTTTTGAT
  TTTTACAATT ACTATCCACG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss131782954	ENSMUSSNP6477169	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T		G
ss323594391	CHEV_11_21269735	CHEVERUD	SCREENING_POP	f	SNP				T		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs46862489					SNP	T	T	T	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:21319732 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2630	CpG island 2630	682 bp proximal
Gm12043	predicted gene 12043	341 bp upstream
Rr246416	regulatory region 246416	within coordinates
Rr402440	regulatory region 402440	1405 bp upstream
Tssr3440	transcription start site region 3440	1039 bp downstream
Tssr3441	transcription start site region 3441	1069 bp downstream
Tssr3442	transcription start site region 3442	1260 bp upstream
Tssr100572	transcription start site region 100572	1001 bp upstream
Tssr107064	transcription start site region 107064	720 bp downstream
Tssr107065	transcription start site region 107065	840 bp downstream
Tssr107066	transcription start site region 107066	915 bp downstream
Tssr107067	transcription start site region 107067	934 bp downstream
Tssr107068	transcription start site region 107068	946 bp downstream
Tssr107069	transcription start site region 107069	1411 bp downstream
Tssr107070	transcription start site region 107070	1532 bp downstream
Ugp2	UDP-glucose pyrophosphorylase 2	within coordinates