rs46862547 SNP Detail

Summary

• ID
  rs46862547
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:13489968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATCTCAAT AGTGCCCTCC
  AGGAGGTATA GCTCAGGAAA ATGTATAAGC CCCAGGGTAT AACTTGTAAA GCACAGTGAT
  AATTCCAGAA GCTAATGCCA GGCACATATG AAGTGTATTT GTGTTTTAAT AAGATCTATG
  TTGGTTTTAG TCACTTCCTG GTACAATAAA TTTGGAAGAT TTTCTTCTGA AAAGTTTTAG
  W
  TTTTTTTTTC CTCAGAAATA ATAATTGTAT CATTTGAGTT TGTGAAAAGT TTGTACCATA
  CAAATCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCCCTCTCTC TCTCTCTCTC
  TGTCACACAC ACACACACAC ACACACACAC TCACTCTCAC ACACATACGC ATACAGAGGC
  ACAAGTGTAT ATATTTAAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52533619	NES15597312	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	A	A	A	T	A	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46862547					SNP	A	A	A	A	A	T	A	A	A	T	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52533619	NES15597312	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:13489968 () rs orientation: forward

Symbol	Name	Function Class
D15Mit179	DNA segment, Chr 15, Massachusetts Institute of Technology 179	41 bp proximal