rs46863715 SNP Detail

Summary

• ID
  rs46863715
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:58669900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCCT TTGTGTAGTG ACTGACAGCT
  S
  TTCTCTAGAT ATTTGCAATC ATGGT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146566757	ENSMUSSNP6579025	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss325872642	CHEV_19_58755958	CHEVERUD	SCREENING_POP	f	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs46863715					SNP	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58669900 () rs orientation: forward

Symbol	Name	Function Class
Pnlip	pancreatic lipase	within coordinates
Tssr157281	transcription start site region 157281	1931 bp downstream
Tssr157282	transcription start site region 157282	1911 bp downstream
Tssr157283	transcription start site region 157283	1719 bp downstream
Tssr157284	transcription start site region 157284	1411 bp downstream
Tssr157285	transcription start site region 157285	706 bp downstream
Tssr157286	transcription start site region 157286	659 bp downstream
Tssr157287	transcription start site region 157287	631 bp downstream
Tssr157288	transcription start site region 157288	278 bp upstream
Tssr159962	transcription start site region 159962	316 bp downstream